You're thinking of two different things- one is the 'ECU noise bead' crush TSB and the other is the J1 resistor you remove completely, activating the 2nd EPROM slot on the ECU board the Stage 1 chip installs into. Both the J1 resistor and the noise suppression bead can be seen in photos here:
http://www.svx-iw.com/svxiw/article/?article=143
You can read the Stage 1 chip install instructions here:
http://www.ecutune.com/SVX-Stage-1-Instructions.pdf
Read those install instructions and most of your questions will be answered.