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Well on the legacy there is a pin on the ecu to tell the ECU if the car is a Mt or an AT. I think you have to ground one to make it work.
I have the wiring diagrams for a 98 GT if that will help I can give you pin numbers.
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2005 Legacy GT
2002 WRX VF22, Pinks, big TMIC and turbo back 128,*** miles 
My WRX's Cardomain Page
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